Healthy Pecan Pie Bars (Gluten Free, Paleo, Dairy Free)

Published by:
Liz Marino
| 11/10/2020 | Last Updated: 12/28/2024

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Healthy Pecan Pie Bars are one of the best pecan pie recipes! Gluten free, paleo and refined sugar free – an easy holiday dessert you’ll love!

An overhead shot of Healthy Pecan Pie Bars cut on parchment paper


 

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When we got a request for holiday desserts, we took it seriously. From Apple Crumble Bars to Pumpkin Pie Bars, we’ve covered almost all the bases.. but we couldn’t forget pecan pie!!

If you’re searching for other Holiday Recipes – check out these 50 Healthy Thanksgiving Recipes or Healthy Christmas Recipes!

Pecan pie is something I sadly didn’t grow up eating (my brother is allergic to nuts) but when I first tried it a few years ago I fell in love.

A buttery crust filled with sweet pecans.. uh yeah, count me in. This year we wanted to bring you a pecan pie that has ALL that flavor, with cleaned up ingredients

These taste just like the classic pecan pie while being totally paleo, dairy free, gluten free, grain free, and lower in sugar.

Note: This recipe is a bit more involved than compared to our other recipes – but it’s well worth the extra time! I think you’re going to love them! 

Pecan Pie Bar Video:

Paleo Pecan Pie Bars stacked on top of one another with a white background

What makes these pecan pie bars healthier?

Calorie for calorie, these bars are not very different from a classic pecan pie bar. Pecans are a high calorie food, and they’re the main ingredient.

These bars are not something we’d recommend eating every day, but they do have a few things that make them different from classic pecan pie

  • Sugar: Most pecan pie bars have 40-50 grams of sugar, while these bars have 22g. 22g of sugar is still A LOT of sugar, but almost half the amount of classic pie!
  • Ingredients: Classic pecan pie is made with a ton of corn syrup. These bars have no corn syrup and considerably less sugar.
  • Lower Carb: These bars are not low carb, but classic pecan pie has about 65g of carbs per slice, while these only have 37g of carbs per bar.

This has nothing to do with them being healthier, but these bars are also A LOT easier to make than regular pie. Who has time for rolling out pie crust? Not me.

A close up of gluten free pecan pie bars in a small white bowl with a cup of coffee in the background.

Ingredients for Healthy Pecan Pie Bars

To make these healthy pecan pie bars you’ll need:

Ingredients for Healthy Pecan Pie Bars in small white bowls on a grey background

These bars are gluten free, dairy free, nut free, soy free, refined sugar free, and grain free. You can’t substitute the flours in this recipe. See the green box below for notes on substitutions.

We recommend making these in a metal 8×8 baking pan.

How to make Paleo Pecan Bars

To make these Paleo Pecan Bars first we’ll make the crust.

Pecan pie bar crust ingredients mixed together in a glass bowl with a whisk in the bowl.
  1. Mix together the ingredients for the crust.
Pecan pie bar crust pressed into an 8x8 pan.
  1. Press your dough into your pan & bake.
Pecan pie filling in a bowl on a white background.
  1. While the crust bakes – make the filling.
A close up of pecan pie bar filling.
  1. Pour the pecan mixture into the crust and bake at 350 for 15-17 minutes.
Pecan pie bars in an 8x8 pan before cutting.
  1. Allow the bars to cool on the counter for 1 hour.
Healthy Pecan Pie Bars stacked on top of one another with a white background
  1. Transfer to the fridge for at least 2 hours before you cut it into bars.

Serving Gluten Free Pecan Bars:

These Gluten Free Pecan Bars are perfect on their own but we really love the Maldon sea salt at the end. The salty/sweet combo is so delish!

Serving: We recommend serving these with whipped cream and vanilla ice cream. Feel free to sub in dairy free if necessary. These bars are also great plain!

Serving Size: I divided this into 9 pecan pie bars, but you can also cut them into 16 if you’d prefer smaller pecan pie bars.

Gluten Free Pecan Pie Bars in a metal baking pan

Substitutions Healthy Pecan Bars

We love to provide substitutions for our recipes, but this recipe is pretty specific and there aren’t many substitutions I can provide.

If you make these bars as is you’ll wind up with perfect gluten free, paleo, lighter pecan pie bars – but if you make swaps you might wind up with a mess!

Baking pan: This recipe was tested in both glass and metal baking dishes. Metal conducts heat far better than glass so it was finished quicker! Make sure you follow instructions to avoid the bars from sticking!

Flour: I don’t recommend other flours for the crust, especially almond flour. The curst is a tried and true formula of coconut and tapioca. The tapioca provides a binder along with the egg. this crust is very cookie like!

Eggs: You can’t substitute eggs in the crust for this recipe.

Ghee: Ghee was used for flavor. We don’t recommend coconut oil for a swap because you won’t get the same flavor and it is very greasy. Grass fed butter or regular butter would be good swaps for the ghee. I have not tried dairy free butter. Thrive Market has an organic Ghee that is delivered right to your door. Read our post Is Thrive Market Worth It to find out why we love them!

Maple syrup: Honey can be used in place of maple syrup in the filling but it will have a different flavor.

Coconut Sugar: Brown sugar can be used in place of coconut sugar if you’re not paleo.

Doubling the recipe: I haven’t tried doubling the recipe, but I think it would work in a 9×13 pan.

Almond Milk: You can substitute regular milk in place of almond milk if you’re not dairy free.

A hand holding a healthy pecan pie bar up to the camera

I mean… don’t you just want to take a bite?!

How to store paleo pecan pie bars:

Gluten Free Pecan Pie Bars should be stored in the refrigerator. They will last in the refrigerator for up to a week. 

Heating: If you like warm pecan pie just heat in the microwave for 10-20 seconds.  

Freezing:  I haven’t tried freezing these pecan bars but I don’t think they would freeze well in an airtight container.

Paleo Pecan Pie Bars Stacked on top of one another with other healthy bars scattered around

We hope you love these pecan pie bars just as much as we did! 

We love to enjoy with a mug of warm Healthy Hot Chocolate!

Pecan Pie Bar FAQ

How bad is pecan pie for you?

Pecan pie is loaded with sugar and fat which is what makes it ‘bad for you’. I believe in everything in moderation, but these pecan pie bars are lower in fat, sugar and carbs.

Can I make a pecan pie the night before?

Yes! You can make pecan pie the night before! It’s actually better to do that so your pecan pie can set.

A close up of a healthy pecan pie bar with a bite taken out of it

Other healthy dessert recipes:

If you’re looking for other healthier desserts – check out this blog post with 30 Healthy Holiday Desserts, or any of these!

An overhead shot of Healthy Pecan Pie Bars cut on parchment paper

Healthy Pecan Pie Bars

Recipe by: Liz Marino
5 from 16 votes
Healthy Pecan Pie Bars are one of the best pecan pie recipes! Gluten free, paleo and refined sugar free – an easy holiday dessert you'll love!
Prep Time : 10 minutes
Cook Time : 20 minutes
Total Time : 1 hour 30 minutes
Serves : 9 bars
(hover over # to adjust)

Ingredients

Crust:

Filling:

Instructions

  1. Preheat Oven to 350 Degrees
  2. Prepare an 8×8 Baking Pan with parchment paper and spray the pan and parchment with cooking spray. It’s very important to prevent sticking.
  3. Mix together the maple syrup, ghee (be sure it’s cooled), egg, vanilla, coconut flour, tapioca flour and salt. It will seem loose, but trust that the coconut flour is like a sponge and it will quickly form a dough you can press in the pan.
  4. Press your dough into your prepared pan. Poke it lightly with a fork, but do NOT go through the crust completely.
  5. Bake at 350 degrees for 8 minutes. Take it out and allow it to cool while you make the filling.
  6. Over medium high heat, in a medium sauce pan, add your ghee, maple syrup, coconut sugar and vanilla. Whisk constantly for about 4-5 minutes.
  7. Let the mixture come to a low boil for one minute so all the sugar dissolves. It’s very important that you whisk constantly because sugar burns fast.
  8. The mixture will be slightly thicker than pancake syrup consistency.
  9. Take it off the heat and add in the vanilla almond milk, pecans and the 1/8 teaspoon of salt. Stir it together and make sure your crust is cool to the touch. It doesn’t have to be cool to room temp, but you should be able to pick up the pan without it being too hot.
  10. Pour the pecan mixture into the crust and bake at 350 for 15-17 minutes. Note: the mixture will cook down in the oven and reduce. It will still however be a little loose when you take it out. You want to see a lot of bubbling and the pecans to kind of poke through the top.
  11. Sprinkle the top with the flaked sea salt (if using). I highly recommend this step because it really plays to the sweet and salty nuttiness of these bars.
  12. Allow the bars to cool on the counter for 1 hour. Transfer to the fridge for at least 2 hours before you cut it.
  13. Cut them into bars and serve.  You can store these in the fridge wrapped in parchment in an air tight container for up to one week. I have not frozen them, but I’d imagine the moisture from freezing wouldn’t be ideal for texture.

Video

Notes

Substitutions for this recipe: 
Baking pan: This recipe was tested in both glass and metal baking dishes. Metal conducts heat far better than glass so it got done quicker. Make sure you follow instructions to avoid the bars from sticking!
Flour: I don’t recommend other flours for the crust, especially almond flour. The crust is a tried and true formula of coconut and tapioca. The tapioca provides a binder along with the egg.
This crust is very cookie like and really reminds you of the holidays. 
Eggs: You can’t substitute eggs in the crust for this recipe.
Ghee: Ghee was used for flavor. We don’t recommend coconut oil for a swap for two reasons -you don’t get that cookie flavor if you use it, and it also is really greasy. Grass fed butter, regular butter (if not paleo) are all fine subs for the ghee
Maple SyrupHoney can be used in place of maple syrup in the pecan filling but it will not have maple flavor to it!
Coconut Sugar : Brown sugar can be used in the pecan filling if not paleo
Doubling the recipe: I haven’t tried doubling this recipe but I’m sure it would work in a 9×13 pan.
Almond Milk : You can substitute regular milk in place of almond milk if you’re not dairy free

Nutrition Facts

Serving: 1bar | Calories: 513kcal | Carbohydrates: 37g | Protein: 5g | Fat: 40g | Saturated Fat: 14g | Cholesterol: 61mg | Sodium: 153mg | Potassium: 178mg | Fiber: 6g | Sugar: 22g | Vitamin A: 43IU | Vitamin C: 1mg | Calcium: 51mg | Iron: 1mg
Course: Dessert
Cuisine: American
Tried this recipe?Share it! Make sure to tag @thecleaneatingcouple or use #thecleaneatingcouple!
5 from 16 votes (1 rating without comment)

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Recipe Rating




30 Comments

  1. 5 stars
    Incredible I made mine dairy free using vegan butter & used only 1 cup of pecans to cut calories a bit. I weighed everything to convert to grams & cut 16 squares to get it to 193 calories a square. I’ve lost over 70 pounds so watch my calories. One cup of pecans was perfect for me. So yummy & rich. Thank you.

  2. 5 stars
    These are seriously the absolute best! Easy to make. Not too sweet. Plant based butter worked for me. I have just been asked to make it again! So much less guilt than “standard” pecan pie. Just about recipe I make is from The Clean Eating Couple. Thank you.

  3. Angel Harrowfield says:

    5 stars
    Wow!!! these are amazing. Everybody loved them and they are asking for the recipe. Don’t deviate from the recipe and they will be perfect.

  4. Can these be made without crust

    1. The Clean Eating Couple says:

      I don’t think so.. it’s not really a pecan pie. You’d just have pecans cooked in syrup in a dish. Serving that would make a mess. I don’t recommend trying that

  5. 5 stars
    I’ve made these three times and they were perfect every time! I added vanilla bean ice cream and homemade whipped cream for a more decadent dessert.
    I used the pecan filling and put into puff pastry and that was good, just not as fantastic as your shortbread crust.
    This is a 5 star recipe.

    1. The Clean Eating Couple says:

      So glad you liked them! That sounds SO good!

  6. 5 stars
    I totally messed up the consistency when “chopping” the nuts in a food processor that made more of a fine pecan powder, but they still came out yummy! Next time I won’t try to multitask lol. I need to rave about the crust though! It was so good and was my favorite part! I would love more recipes with that as a base!

    1. The Clean Eating Couple says:

      Definitely chop them with a knife next time, LOL! So glad you liked them though!

  7. 5 stars
    I made the Healthy Pecan Pie Bars for Thanksgiving. Wow. Wow. Wow! They were a huge hit. Absolutely delicious. I made them for my daughter who has some dietary restrictions. I bought a regular pie for the rest of us. Although the pie was good, my daughter had to keep everyone away from her bars!

    1. The Clean Eating Couple says:

      I’m so happy you liked them, Jeanine! Thank you so much!

  8. 5 stars
    Made this recipe for thanksgiving and they were all gone within minutes! I followed recipe exactly except I used a glass baking dish so instead of baking crust for 8min it took about 11-12min to bake crust. They were so yummy !

  9. 5 stars
    Easy to follow recipe. Used butter and milk in the filling and they were delicious!

    1. The Clean Eating Couple says:

      Yum! Glad you enjoyed!

  10. 5 stars
    There are so delicious!! Husband approved as well … it was hard not to eat the whole pan.
    Will be a keeper recipe for holidays and easier to have around instead of a whole pie! Will be making this again and again … thank you for the wonderful recipe!!

    1. The Clean Eating Couple says:

      So glad you both enjoyed! Thanks, Tobi!

  11. Hi, Could I replace de coconut Flour , I really dont like de flawor of the coconut flour in the finish product. Thanks in Advance

    1. The Clean Eating Couple says:

      Hi Miriam – No you can’t. We’ve mentioned this a few times in the post. I don’t recommend other flours for the crust, especially almond flour. The crust is a tried and true formula of coconut and tapioca. The tapioca provides a binder along with the egg. You can’t taste the coconut flour, it tastes like a regular buttery crust!

  12. 5 stars
    Made them and absolutely LOVE THEM!!! Will be making them again and again!

    1. The Clean Eating Couple says:

      Thanks, Cheri! Glad you liked them!

  13. 5 stars
    These are INCREDIBLE! I made a batch for Thanksgiving and my husband couldn’t believe these were a “healthier” variation. I can also confirm that these are totally freezeable. I wrapped slices individually in Saran Wrap and then put them in a freezer bag. They’re still totally delicious!

    1. The Clean Eating Couple says:

      Thanks, Becky!! So glad you liked them and that they froze well!

  14. 5 stars
    I tried this for Thanksgiving meal and followed recipe step by step. It turned out perfect and everyone loved it. My favorite part was using ghee in the recipe which our family has been using for long time and they loved eating this. Thank you for sharing the recipe.

    1. The Clean Eating Couple says:

      So glad you liked them, Rajesh! I really appreciate the nice review!

  15. 5 stars
    These are the new family favorite for Thanksgiving and beyond! The recipe is simple to follow and the healthier ingredients make for a perfect gluten free dessert! I was shocked at how easy they were to make. Crusts have always intimidated me but this was simple enough for my kids to make right along side. Nobody at the dinner table guessed these gooey, delicious bars were made with healthier ingredients either. Thanks for yet another winning recipe!

    1. The Clean Eating Couple says:

      So happy you liked them, Jen! This makes me so happy to hear!

  16. 5 stars
    I used a smaller pan than called for (gotta use what you have) and thought it was a bust. So I put them back in the fridge overnight and tried them again in the morning and they were ridiculous! The crust part was thicker and softer than the pictures (again, smaller pan), but all of the pecan caramel goodness soaked in and made magic. So use the right size pan or be patient and put them in the fridge overnight.

    1. The Clean Eating Couple says:

      So glad you liked them, Charity! Thank you so much! They definitely need to cool for at least 2 hours, but I bet if you put it in a smaller pan it needed longer to cook or the cook times were just off because they were so much thicker. Glad you liked them!

  17. 5 stars
    These were freaking awesome and super easy to make. I brought them to a get together and people who don’t even like pecan pie were raving about them. I used butter and whole milk but I don’t think those adjustments changed the flavor profile at all. I also used 2 cups of pecans (not 2.5) which I thoughts was plenty. These bars will definitely be a yearly tradition in my family.

    1. The Clean Eating Couple says:

      Thank you so much, Kailey!! I’m so glad you liked them! This made my day 🙂